MAC2023

This repository is part of the course “MICROBIOME ANALYSIS USING 2ND AND 3RD GENERATION DNA SEQUENCING - 2023” (MAC2023) at the University of Copenhagen.

The course GitHub pages: https://yanhui09.github.io/MAC2023

Supplementary materials: https://github.com/yanhui09/MAC2023-extra

As most bioinformatic software only have linux/amd64 distribution, a Linux/amd64 environment is recommended.

For cross-platform support including MacOS, we recommend using docker. Unfortunately, arm64 platforms e.g., Apple silicon are not supported yet.

Session

Aug 22 (Tue): ONT 16S rRNA amplicon analysis with LACA and NART

Aug 23 (Wed): Genome assembly with 2nd and 3rd WGS data